Transcript: LINC01435:7

Basic information

LNCipedia transcript ID: LINC01435:7 
LNCipedia gene ID: LINC01435
Location (hg38): chr10:107871577-108069293
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 720 bp
Exons: 5
Sources: Refseq - Dec 2014
Alternative transcript names: NR_125760
Alternative gene names: RP11-215N21.1; TCONS_00018040


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -52.2632 non-coding 
CPAT coding probability 10.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01435:7 no no no no

Available literature

  1. Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SORCS1-3:17
4.0 LINC01435:7
4.1 LINC01435:7
5.0 LINC01435:7
5.1 LINC01435:7
5.2 LINC01435:7