Transcript: LINC01436:2

Basic information

LNCipedia transcript ID: LINC01436:2 
LNCipedia gene ID: LINC01436
Location (hg38): chr21:36005338-36007601
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 811 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00028841; ENST00000457157.1; AP000688.8-001; OTTHUMT00000194413.1; NONHSAT081928
Alternative gene names: XLOC_013929; linc-CBR1-1; ENSG00000231106.1; AP000688.8; OTTHUMG00000086463.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.8596 non-coding 
CPAT coding probability 13.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01436:2 no no no no

Available literature

  1. Rajpathak (2014), Human 45,X fibroblast transcriptome reveals distinct differentially expressed genes including long noncoding RNAs potentially associated with the pathophysiology of Turner syndrome., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CBR1-2:1
3.1 lnc-CBR1-3:1
4.0 LINC01436:2
4.1 LINC01436:2
5.0 LINC01436:2
5.1 LINC01436:2
5.2 LINC01436:2