Transcript: LINC01440:11

Basic information

LNCipedia transcript ID: LINC01440:11 
HGNC Gene Symbol: LINC01440    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1440
Ensembl Gene ID: ENSG00000235166
Ensembl Transcript ID: ENST00000596828
Location (hg38): chr20:55423370-55426692
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1005 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT080429; ENST00000596828.1
Alternative gene names: ENSG00000235166.3; RP5-1010E17.1; ENSG00000235166.7; LINC01440;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -359.5653 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01440:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DOK5-1:8
4.0 LINC01440:11
4.1 LINC01440:11
5.0 LINC01440:11
5.1 LINC01440:11
5.2 LINC01440:11