Transcript: LINC01440:5

Basic information

LNCipedia transcript ID: LINC01440:5 
HGNC Gene Symbol: LINC01440    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1440
Ensembl Gene ID: ENSG00000235166
Ensembl Transcript ID: ENST00000416190
Location (hg38): chr20:55423043-55468214
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1340 bp
Exons: 8
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027956; ENST00000416190; ENST00000416190.1; RP5-1010E17.1-002; OTTHUMT00000259285.1; NONHSAT080427; ENST00000416190.5
Alternative gene names: XLOC_013573; linc-MC3R-4; ENSG00000235166; RP5-1010E17.1; ENSG00000235166.1; OTTHUMG00000032780.2; ENSG00000235166.3; ENSG00000235166.7; LINC01440;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.4089 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01440:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-MC3R-4:1
3.1 lnc-DOK5-1:1
4.0 LINC01440:5
4.1 LINC01440:5
5.0 LINC01440:5
5.1 LINC01440:5
5.2 LINC01440:5