Transcript: LINC01456:1

Basic information

LNCipedia transcript ID: LINC01456:1 
HGNC Gene Symbol: LINC01456    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1456
Ensembl Gene ID: ENSG00000225882
Ensembl Transcript ID: ENST00000453902
Location (hg38): chrX:17970197-18104644
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 708 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017043; ENST00000453902; ENST00000453902.1; RP3-410B11.1-001; OTTHUMT00000055939.1; NONHSAT136412
Alternative gene names: XLOC_008124; linc-RAI2; ENSG00000225882; RP3-410B11.1; ENSG00000225882.1; OTTHUMG00000021210.1; LINC01456;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.2058 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01456:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BEND2-1:1
3.1 lnc-BEND2-1:1
4.0 LINC01456:1
4.1 LINC01456:1
5.0 LINC01456:1
5.1 LINC01456:1
5.2 LINC01456:1