Transcript: LINC01473:14

Basic information

LNCipedia transcript ID: LINC01473:14 
LNCipedia gene ID: LINC01473
Location (hg38): chr2:185950467-185952920
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 458 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00004522; NONHSAT075978
Alternative gene names: XLOC_002427; linc-NCKAP1-1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.4646 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01473:14 no no no no

Available literature

  1. Brueckner (2012), Genomic rearrangements at the FRA2H common fragile site frequently involve non-homologous recombination events across LTR and L1(LINE) repeats., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZSWIM2-2:1
3.1 lnc-ZSWIM2-4:1
4.0 lnc-ZSWIM2-4:1
4.1 LINC01473:14
5.0 LINC01473:14
5.1 LINC01473:14
5.2 LINC01473:14