Transcript: LINC01473:4

Basic information

LNCipedia transcript ID: LINC01473:4 
LNCipedia gene ID: LINC01473
Location (hg38): chr2:186033145-186083233
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 825 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000456653; ENST00000456653.1; AC097500.2-002; OTTHUMT00000334545.1
Alternative gene names: ENSG00000237877; AC097500.2; ENSG00000237877.1; OTTHUMG00000154250.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.206 non-coding 
CPAT coding probability 0.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01473:4 no no no no

Available literature

  1. Brueckner (2012), Genomic rearrangements at the FRA2H common fragile site frequently involve non-homologous recombination events across LTR and L1(LINE) repeats., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZSWIM2-1:1
3.1 lnc-ZSWIM2-3:1
4.0 LINC01473:4
4.1 LINC01473:4
5.0 LINC01473:4
5.1 LINC01473:4
5.2 LINC01473:4