Transcript: LINC01473:6

Basic information

LNCipedia transcript ID: LINC01473:6 
HGNC Gene Symbol: LINC01473    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1473
Ensembl Gene ID: ENSG00000237877
Ensembl Transcript ID: ENST00000419719
Location (hg38): chr2:186033531-186083223
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419719; ENST00000419719.1; AC097500.2-001; OTTHUMT00000334544.1; NONHSAT075983
Alternative gene names: ENSG00000237877; AC097500.2; ENSG00000237877.1; OTTHUMG00000154250.3; ENSG00000237877.2; ENSG00000237877.6; LINC01473;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -54.206 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01473:6 no no no no

Available literature

  1. Brueckner (2012), Genomic rearrangements at the FRA2H common fragile site frequently involve non-homologous recombination events across LTR and L1(LINE) repeats., Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZSWIM2-1:2
3.1 lnc-ZSWIM2-3:2
4.0 LINC01473:6
4.1 LINC01473:6
5.0 LINC01473:6
5.1 LINC01473:6
5.2 LINC01473:6