Transcript: LINC01474:5

Basic information

LNCipedia transcript ID: LINC01474:5 
HGNC Gene Symbol: LINC01474    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1474
Ensembl Gene ID: ENSG00000236849
Ensembl Transcript ID: ENST00000449235
Location (hg38): chr9:72871728-72874098
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 628 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449235; ENST00000449235.1; RP11-151D14.1-001; OTTHUMT00000052660.1; NONHSAT131880; ENST00000449235.5
Alternative gene names: ENSG00000236849; RP11-151D14.1; ENSG00000236849.1; OTTHUMG00000020015.1; ENSG00000236849.5; LINC01474;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -138.0775 non-coding 
CPAT coding probability 2.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01474:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ALDH1A1-1:2
3.1 lnc-ALDH1A1-1:2
4.0 LINC01474:5
4.1 LINC01474:5
5.0 LINC01474:5
5.1 LINC01474:5
5.2 LINC01474:5