Transcript: LINC01477:2

Basic information

LNCipedia transcript ID: LINC01477:2 
HGNC Gene Symbol: LINC01477    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1477
Ensembl Gene ID: ENSG00000261715
Ensembl Transcript ID: ENST00000566101
RefSeq ID: NR_110791
Location (hg38): chr18:40066286-40099233
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1226 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000566101.1; RP11-653G8.2-001; OTTHUMT00000431600.1; NONHSAT059040; NR_110791; NR_110791.1
Alternative gene names: ENSG00000261715.1; RP11-653G8.2; OTTHUMG00000176177.1; LINC01477;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.3687 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01477:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PIK3C3-1:1
4.0 LINC01477:2
4.1 LINC01477:2
5.0 LINC01477:2
5.1 LINC01477:2
5.2 LINC01477:2