Transcript: LINC01478:5

Basic information

LNCipedia transcript ID: LINC01478:5 
LNCipedia gene ID: LINC01478
Location (hg38): chr18:44518223-44531649
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026707; NONHSAT059089
Alternative gene names: XLOC_012831; linc-SYT4-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -241.7796 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01478:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT4-2:3
3.1 lnc-SYT4-2:3
4.0 LINC01478:5
4.1 LINC01478:5
5.0 LINC01478:5
5.1 LINC01478:5
5.2 LINC01478:5