Transcript: LINC01478:6

Basic information

LNCipedia transcript ID: LINC01478:6 
LNCipedia gene ID: LINC01478
Location (hg38): chr18:44324322-44326478
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 792 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00026706
Alternative gene names: XLOC_012831; linc-SYT4-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.0232 non-coding 
CPAT coding probability 4.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01478:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SYT4-2:4
3.1 lnc-SYT4-2:4
4.0 LINC01478:6
4.1 LINC01478:6
5.0 LINC01478:6
5.1 LINC01478:6
5.2 LINC01478:6