Transcript: LINC01481:20

Basic information

LNCipedia transcript ID: LINC01481:20 
LNCipedia gene ID: LINC01481
Ensembl Gene ID: ENSG00000257815
Ensembl Transcript ID: ENST00000553135
Location (hg38): chr12:70242489-70243358
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 452 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000553135.1; RP11-611E13.2-003; OTTHUMT00000404078.1
Alternative gene names: ENSG00000257815.1; RP11-611E13.2; OTTHUMG00000169445.1; ENSG00000257815.5; LINC01481;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.1211 non-coding 
CPAT coding probability 35.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01481:20 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPRB-1:2
4.0 lnc-BEST3-7:6
4.1 LINC01481:20
5.0 LINC01481:20
5.1 LINC01481:20
5.2 LINC01481:20