Transcript: LINC01486:3

Basic information

LNCipedia transcript ID: LINC01486:3 
HGNC Gene Symbol: LINC01486    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1486
Ensembl Gene ID: ENSG00000256560
Ensembl Transcript ID: ENST00000538041
Location (hg38): chr12:109354083-109359488
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 716 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000538041; ENST00000538041.1; RP11-256L11.1-001; OTTHUMT00000403091.1; NONHSAT030602
Alternative gene names: ENSG00000256560; RP11-256L11.1; ENSG00000256560.1; OTTHUMG00000169251.1; LINC01486; TCONS_00021407


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.9348 non-coding 
CPAT coding probability 30.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01486:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FOXN4-1:3
3.1 lnc-FOXN4-1:3
4.0 LINC01486:3
4.1 LINC01486:3
5.0 LINC01486:3
5.1 LINC01486:3
5.2 LINC01486:3