Transcript: LINC01498:2

Basic information

LNCipedia transcript ID: LINC01498:2 
HGNC Gene Symbol: LINC01498    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1498
Ensembl Gene ID: ENSG00000247213
Ensembl Transcript ID: ENST00000551889
RefSeq ID: NR_120483
Location (hg38): chr12:108459425-108473689
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 549 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000551889; ENST00000551889.1; RP11-13G14.4-003; OTTHUMT00000404873.1; NONHSAT030550; NR_120483; NR_120483.1
Alternative gene names: ENSG00000247213; RP11-13G14.4; ENSG00000247213.2; OTTHUMG00000169577.1; ENSG00000247213.6; LINC01498;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -140.4329 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01498:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SART3-1:3
3.1 lnc-SART3-1:3
4.0 LINC01498:2
4.1 LINC01498:2
5.0 LINC01498:2
5.1 LINC01498:2
5.2 LINC01498:2