Transcript: LINC01499:1

Basic information

LNCipedia transcript ID: LINC01499:1 
HGNC Gene Symbol: LINC01499    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1499
Ensembl Gene ID: ENSG00000255171
Ensembl Transcript ID: ENST00000528720
RefSeq ID: NR_120584
Location (hg38): chr11:41714568-41836442
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 6
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000528720.1; RP11-375D13.2-003; OTTHUMT00000389463.1; NONHSAT018891; NR_120584; ENST00000528720.5; NR_120584.1
Alternative gene names: ENSG00000255171.1; RP11-375D13.2; OTTHUMG00000166376.1; ENSG00000255171.5; LINC01499;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.0323 non-coding 
CPAT coding probability 2.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01499:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-API5-5:1
4.0 LINC01499:1
4.1 LINC01499:1
5.0 LINC01499:1
5.1 LINC01499:1
5.2 LINC01499:1