Transcript: LINC01503:5

Basic information

LNCipedia transcript ID: LINC01503:5 
HGNC Gene Symbol: LINC01503    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1503
Ensembl Gene ID: ENSG00000233901
Ensembl Transcript ID: ENST00000444125
Location (hg38): chr9:129336879-129347464
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 783 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444125; ENST00000444125.1; RP11-65J3.1-003; OTTHUMT00000106361.4; NONHSAT135042
Alternative gene names: ENSG00000233901; RP11-65J3.1; ENSG00000233901.1; OTTHUMG00000020778.5; ENSG00000233901.5; LINC01503; lnc-PPP2R4-5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.7282 non-coding 
CPAT coding probability 31.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01503:5 no no no no

Available literature

  1. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R4-4:3
3.1 lnc-PPP2R4-5:3
4.0 LINC01503:5
4.1 LINC01503:5
5.0 LINC01503:5
5.1 LINC01503:5
5.2 LINC01503:5