Transcript: LINC01504:4

Basic information

LNCipedia transcript ID: LINC01504:4 
HGNC Gene Symbol: LINC01504    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1504
Ensembl Gene ID: ENSG00000225434
Ensembl Transcript ID: ENST00000436054
RefSeq ID: NR_110952
Location (hg38): chr9:72305436-72343210
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2078 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000436054; ENST00000436054.1; RP11-63P12.6-001; OTTHUMT00000052641.1; NONHSAT131858; NR_110952; NR_110952.1
Alternative gene names: ENSG00000225434; RP11-63P12.6; ENSG00000225434.1; OTTHUMG00000020007.1; ENSG00000225434.2; LINC01504;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.0648 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01504:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GDA-2:2
3.1 lnc-GDA-2:2
4.0 LINC01504:4
4.1 LINC01504:4
5.0 LINC01504:4
5.1 LINC01504:4
5.2 LINC01504:4