Transcript: LINC01505:1

Basic information

LNCipedia transcript ID: LINC01505:1 
LNCipedia gene ID: LINC01505
Location (hg38): chr9:106616010-106679738
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 881 bp
Exons: 6
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT133844; FPKM1_group_33688_transcript_2
Alternative gene names: ; RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.2525 non-coding 
CPAT coding probability 8.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01505:1 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF462-1:7
4.0 LINC01505:1
4.1 LINC01505:1
5.0 LINC01505:1
5.1 LINC01505:1
5.2 LINC01505:1