Transcript: LINC01505:13

Basic information

LNCipedia transcript ID: LINC01505:13 
LNCipedia gene ID: LINC01505
Location (hg38): chr9:106571733-106604870
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2878 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT133839; FPKM1_group_33686_transcript_2
Alternative gene names: RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -130.1154 non-coding 
CPAT coding probability 0.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01505:13 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF462-2:3
4.0 lnc-ZNF462-2:3
4.1 LINC01505:13
5.0 LINC01505:13
5.1 LINC01505:13
5.2 LINC01505:13