Transcript: LINC01505:2

Basic information

LNCipedia transcript ID: LINC01505:2 
HGNC Gene Symbol: LINC01505    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1505
Ensembl Gene ID: ENSG00000234323
Ensembl Transcript ID: ENST00000444985
Location (hg38): chr9:106616058-106679798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2054 bp
Exons: 7
Sources: Broad Institute; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015584; NONHSAT133846; ENST00000444985.2; ENST00000444985.6
Alternative gene names: XLOC_007502; linc-ZNF462-1; ENSG00000234229.3; RP11-308N19.4; ENSG00000234229.7; LINC01505; ; ENSG00000234323.6; RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2508 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01505:2 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF462-1:1
3.1 lnc-ZNF462-1:2
4.0 LINC01505:2
4.1 LINC01505:2
5.0 LINC01505:2
5.1 LINC01505:2
5.2 LINC01505:2