Transcript: LINC01505:3

Basic information

LNCipedia transcript ID: LINC01505:3 
LNCipedia gene ID: LINC01505
Location (hg38): chr9:106616058-106679798
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2055 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00015732; ENST00000444985; ENST00000444985.1; RP11-308N19.4-002; OTTHUMT00000053529.1; NONHSAT133845
Alternative gene names: XLOC_007502; linc-ZNF462-1; ENSG00000234229; RP11-308N19.4; ENSG00000234229.1; OTTHUMG00000020435.1; ; RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2508 non-coding 
CPAT coding probability 3.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01505:3 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF462-1:2
3.1 lnc-ZNF462-1:1
4.0 LINC01505:3
4.1 LINC01505:3
5.0 LINC01505:3
5.1 LINC01505:3
5.2 LINC01505:3