Transcript: LINC01505:6

Basic information

LNCipedia transcript ID: LINC01505:6 
LNCipedia gene ID: LINC01505
Location (hg38): chr9:106616087-106638252
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 324 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00016663
Alternative gene names: XLOC_007502; linc-ZNF462-1; ; RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -45.2508 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01505:6 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF462-1:4
3.1 lnc-ZNF462-1:4
4.0 LINC01505:6
4.1 LINC01505:6
5.0 LINC01505:6
5.1 LINC01505:6
5.2 LINC01505:6