Transcript: LINC01505:7

Basic information

LNCipedia transcript ID: LINC01505:7 
LNCipedia gene ID: LINC01505
Location (hg38): chr9:106639367-106679738
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 447 bp
Exons: 4
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00016115; NONHSAT133848
Alternative gene names: XLOC_007502; linc-ZNF462-1; ; RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.3608 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01505:7 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF462-1:5
3.1 lnc-ZNF462-1:5
4.0 LINC01505:7
4.1 LINC01505:7
5.0 LINC01505:7
5.1 LINC01505:7
5.2 LINC01505:7