Transcript: LINC01505:9

Basic information

LNCipedia transcript ID: LINC01505:9 
HGNC Gene Symbol: LINC01505    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1505
Ensembl Gene ID: ENSG00000234229
Ensembl Transcript ID: ENST00000411451
Location (hg38): chr9:106664754-106702662
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 686 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411451.2
Alternative gene names: ENSG00000234229.3; RP11-308N19.4; ENSG00000234229.7; LINC01505; ; ENSG00000234229.8; RP11-308N19.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -8.1285 non-coding 
CPAT coding probability 83.01% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01505:9 no no no no

Available literature

  1. Lanzós (2017), Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF462-1:9
4.0 LINC01505:9
4.1 LINC01505:9
5.0 LINC01505:9
5.1 LINC01505:9
5.2 LINC01505:9