Transcript: LINC01506:2

Basic information

LNCipedia transcript ID: LINC01506:2 
HGNC Gene Symbol: LINC01506    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1506
Ensembl Gene ID: ENSG00000234506
Ensembl Transcript ID: ENST00000446290
Location (hg38): chr9:68543541-68546589
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 338 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00015829; ENST00000446290; ENST00000446290.1; RP11-274B18.2-002; OTTHUMT00000052553.1; NONHSAT131750
Alternative gene names: XLOC_007722; linc-C9orf71-1; ENSG00000234506; RP11-274B18.2; ENSG00000234506.1; OTTHUMG00000019968.1; ENSG00000234506.5; LINC01506;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -123.7467 non-coding 
CPAT coding probability 1.49% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01506:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C9orf71-1:1
3.1 lnc-C9orf71-1:1
4.0 LINC01506:2
4.1 LINC01506:2
5.0 LINC01506:2
5.1 LINC01506:2
5.2 LINC01506:2