Transcript: LINC01509:3

Basic information

LNCipedia transcript ID: LINC01509:3 
HGNC Gene Symbol: LINC01509    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1509
Ensembl Gene ID: ENSG00000226825
Ensembl Transcript ID: ENST00000415302
Location (hg38): chr9:107427240-107428402
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 207 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000415302; ENST00000415302.1; RP11-363D24.1-002; OTTHUMT00000053553.1; NONHSAT133872
Alternative gene names: ENSG00000226825; RP11-363D24.1; ENSG00000226825.1; OTTHUMG00000020447.1; LINC01509;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.915 non-coding 
CPAT coding probability 15.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01509:3 no no no no

Available literature

  1. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KLF4-1:2
3.1 lnc-KLF4-1:2
4.0 LINC01509:3
4.1 LINC01509:3
5.0 LINC01509:3
5.1 LINC01509:3
5.2 LINC01509:3