Transcript: LINC01512:4

Basic information

LNCipedia transcript ID: LINC01512:4 
LNCipedia gene ID: LINC01512
Location (hg38): chr6:43891028-43938206
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2281 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00011120
Alternative gene names: XLOC_005295; linc-C6orf223; LOC100132354; TCONS_00011120; HI-LNC77


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -106.4163 non-coding 
CPAT coding probability 3.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01512:4 no no no no

Available literature

  1. Xu (2014), Long noncoding RNA expression profiles of lung adenocarcinoma ascertained by microarray analysis., PLoS ONE
  2. Morán (2012), Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf223-2:2
3.1 lnc-C6orf223-2:2
4.0 LINC01512:4
4.1 LINC01512:4
5.0 LINC01512:4
5.1 LINC01512:4
5.2 LINC01512:4