Transcript: LINC01516:1

Basic information

LNCipedia transcript ID: LINC01516:1 
LNCipedia gene ID: LINC01516
Location (hg38): chr10:25113058-25117357
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 789 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00017798; ENST00000436140; ENST00000436140.1; RP11-80K21.3-001; OTTHUMT00000047247.1; NONHSAT139961
Alternative gene names: XLOC_008414; linc-GPR158-2; ENSG00000231422; RP11-80K21.3; ENSG00000231422.1; OTTHUMG00000017831.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -219.6723 non-coding 
CPAT coding probability 5.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01516:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR158-1:1
3.1 lnc-GPR158-1:1
4.0 LINC01516:1
4.1 LINC01516:1
5.0 LINC01516:1
5.1 LINC01516:1
5.2 LINC01516:1