Transcript: LINC01516:2

Basic information

LNCipedia transcript ID: LINC01516:2 
HGNC Gene Symbol: LINC01516    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1516
Ensembl Gene ID: ENSG00000231422
Ensembl Transcript ID: ENST00000436140
Location (hg38): chr10:25113058-25161236
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2992 bp
Exons: 7
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT011798; ENST00000436140.2
Alternative gene names: ENSG00000231422.2; RP11-80K21.3; LINC01516;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -28.797 non-coding 
CPAT coding probability 17.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01516:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR158-1:2
4.0 LINC01516:2
4.1 LINC01516:2
5.0 LINC01516:2
5.1 LINC01516:2
5.2 LINC01516:2