Transcript: LINC01517:10

Basic information

LNCipedia transcript ID: LINC01517:10 
HGNC Gene Symbol: LINC01517    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1517
Ensembl Gene ID: ENSG00000232624
Ensembl Transcript ID: ENST00000426922
Location (hg38): chr10:28792803-28808219
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 980 bp
Exons: 6
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000426922.2; ENST00000426922.6
Alternative gene names: ENSG00000232624.2; RP11-478H13.3; ENSG00000232624.6; LINC01517; ; ENSG00000232624.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.0728 non-coding 
CPAT coding probability 1.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01517:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BAMBI-1:7
4.0 LINC01517:10
4.1 LINC01517:10
5.0 LINC01517:10
5.1 LINC01517:10
5.2 LINC01517:10