Transcript: LINC01517:16

Basic information

LNCipedia transcript ID: LINC01517:16 
LNCipedia gene ID: LINC01517
Location (hg38): chr10:28806947-28808219
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 406 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000426922; ENST00000426922.1; RP11-478H13.3-001; OTTHUMT00000047378.1; NONHSAT012500
Alternative gene names: ENSG00000232624; RP11-478H13.3; ENSG00000232624.1; OTTHUMG00000017877.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.592 non-coding 
CPAT coding probability 0.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01517:16 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C10orf126-1:1
3.1 lnc-C10orf126-1:1
4.0 LINC01517:16
4.1 LINC01517:16
5.0 LINC01517:16
5.1 LINC01517:16
5.2 LINC01517:16