Transcript: LINC01517:5

Basic information

LNCipedia transcript ID: LINC01517:5 
LNCipedia gene ID: LINC01517
Ensembl Gene ID: ENSG00000236716
Ensembl Transcript ID: ENST00000456082
Location (hg38): chr10:28743745-28744663
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 517 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017803; ENST00000456082; ENST00000456082.1; RP11-478H13.1-001; OTTHUMT00000047375.1; NONHSAT011953
Alternative gene names: XLOC_008424; linc-LYZL1-6; ENSG00000236716; RP11-478H13.1; ENSG00000236716.1; OTTHUMG00000017875.1; ; AL355376.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -111.2586 non-coding 
CPAT coding probability 3.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01517:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-BAMBI-1:3
3.1 lnc-BAMBI-1:3
4.0 LINC01517:5
4.1 LINC01517:5
5.0 LINC01517:5
5.1 LINC01517:5
5.2 LINC01517:5