Transcript: LINC01522:4

Basic information

LNCipedia transcript ID: LINC01522:4 
HGNC Gene Symbol: LINC01522    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1522
Ensembl Gene ID: ENSG00000237423
Ensembl Transcript ID: ENST00000428999
Location (hg38): chr20:47980488-47988744
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 429 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028057; ENST00000428999; ENST00000428999.1; RP11-347D21.3-001; OTTHUMT00000079613.1; NONHSAT147169
Alternative gene names: XLOC_013772; linc-SULF2-4; ENSG00000237423; RP11-347D21.3; ENSG00000237423.1; OTTHUMG00000032678.1; LINC01522;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.2629 non-coding 
CPAT coding probability 0.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01522:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SULF2-3:3
3.1 lnc-SULF2-3:3
4.0 LINC01522:4
4.1 LINC01522:4
5.0 LINC01522:4
5.1 LINC01522:4
5.2 LINC01522:4