Transcript: LINC01523:3

Basic information

LNCipedia transcript ID: LINC01523:3 
HGNC Gene Symbol: LINC01523    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1523
Ensembl Gene ID: ENSG00000229522
Ensembl Transcript ID: ENST00000425385
Location (hg38): chr20:47983404-47984313
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 450 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027940; ENST00000425385; ENST00000425385.1; RP11-347D21.4-001; OTTHUMT00000079614.1; NONHSAT080116
Alternative gene names: XLOC_013546; linc-ARFGEF2-9; ENSG00000229522; RP11-347D21.4; ENSG00000229522.1; OTTHUMG00000032679.1; LINC01523;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -169.8663 non-coding 
CPAT coding probability 35.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01523:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NCOA3-7:2
3.1 lnc-NCOA3-8:2
4.0 LINC01523:3
4.1 LINC01523:3
5.0 LINC01523:3
5.1 LINC01523:3
5.2 LINC01523:3