Transcript: LINC01524:2

Basic information

LNCipedia transcript ID: LINC01524:2 
HGNC Gene Symbol: LINC01524    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1524
Ensembl Gene ID: ENSG00000234948
Ensembl Transcript ID: ENST00000428009
Location (hg38): chr20:52620838-52650431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4390 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027950; ENST00000428009.1; RP4-723E3.1-002; OTTHUMT00000259160.1; NONHSAT080373
Alternative gene names: XLOC_013566; linc-TSHZ2-2; ENSG00000234948.1; RP4-723E3.1; OTTHUMG00000134297.2; LINC01524;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -96.6945 non-coding 
CPAT coding probability 12.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01524:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSHZ2-4:1
3.1 lnc-TSHZ2-5:2
4.0 LINC01524:2
4.1 LINC01524:2
5.0 LINC01524:2
5.1 LINC01524:2
5.2 LINC01524:2