Transcript: LINC01524:20

Basic information

LNCipedia transcript ID: LINC01524:20 
LNCipedia gene ID: LINC01524
Ensembl Gene ID: ENSG00000232294
Ensembl Transcript ID: ENST00000413070
Location (hg38): chr20:52674411-52681578
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 465 bp
Exons: 4
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027952; ENST00000413070; ENST00000413070.1; RP4-715N11.2-002; OTTHUMT00000079752.1; NONHSAT080377
Alternative gene names: XLOC_013567; linc-TSHZ2-1; ENSG00000232294; RP4-715N11.2; ENSG00000232294.1; OTTHUMG00000032760.2; ENSG00000232294.5; ; AL031674.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -103.5954 non-coding 
CPAT coding probability 0.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01524:20 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSHZ2-3:3
3.1 lnc-TSHZ2-3:3
4.0 lnc-TSHZ2-3:3
4.1 LINC01524:20
5.0 LINC01524:20
5.1 LINC01524:20
5.2 LINC01524:20