Transcript: LINC01525:3

Basic information

LNCipedia transcript ID: LINC01525:3 
LNCipedia gene ID: LINC01525
Location (hg38): chr1:117295519-117321336
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 532 bp
Exons: 4
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT005476; FPKM1_group_1312_transcript_1
Alternative gene names: lnc-MAN1A2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.3685 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01525:3 no no no no

Available literature

  1. Gao (2014), Long non-coding RNA deregulation in tongue squamous cell carcinoma., Biomed Res Int


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MAN1A2-1:4
4.0 LINC01525:3
4.1 LINC01525:3
5.0 LINC01525:3
5.1 LINC01525:3
5.2 LINC01525:3