Transcript: LINC01533:17

Basic information

LNCipedia transcript ID: LINC01533:17 
HGNC Gene Symbol: LINC01533    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1533
Ensembl Gene ID: ENSG00000267779
Ensembl Transcript ID: ENST00000589110
Location (hg38): chr19:32048622-32056865
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 491 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT064173; ENST00000589110.1
Alternative gene names: ENSG00000267779.1; CTC-360P9.3; ENSG00000267779.5; LINC01533;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -326.6533 non-coding 
CPAT coding probability 3.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01533:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZNF507-4:14
4.0 LINC01533:17
4.1 LINC01533:17
5.0 LINC01533:17
5.1 LINC01533:17
5.2 LINC01533:17