Transcript: LINC01538:2

Basic information

LNCipedia transcript ID: LINC01538:2 
HGNC Gene Symbol: LINC01538    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1538
Ensembl Gene ID: ENSG00000266952
Ensembl Transcript ID: ENST00000588074
RefSeq ID: NR_033983
Location (hg38): chr18:64213082-64260055
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2408 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT059690; ENST00000588074.1; NR_033983.1
Alternative gene names: ENSG00000266952.1; RP11-909B2.1; LINC01538; TCONS_00026184


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.0885 non-coding 
CPAT coding probability 38.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01538:2 no no no no

Available literature

  1. Samir (2018), Competing endogenous RNA network crosstalk reveals novel molecular markers in colorectal cancer., J. Cell. Biochem.
  2. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SERPINB3-2:3
4.0 LINC01538:2
4.1 LINC01538:2
5.0 LINC01538:2
5.1 LINC01538:2
5.2 LINC01538:2