Transcript: LINC01539:13

Basic information

LNCipedia transcript ID: LINC01539:13 
HGNC Gene Symbol: LINC01539    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1539
Ensembl Gene ID: ENSG00000267712
Ensembl Transcript ID: ENST00000590484
Location (hg38): chr18:56095990-56137349
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 546 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059414; ENST00000590484.1
Alternative gene names: ENSG00000267712.1; RP11-456O19.4; ENSG00000267712.5; LINC01539;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -72.7396 non-coding 
CPAT coding probability 5.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:13 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF4-5:13
4.0 LINC01539:13
4.1 LINC01539:13
5.0 LINC01539:13
5.1 LINC01539:13
5.2 LINC01539:13