Transcript: LINC01539:19

Basic information

LNCipedia transcript ID: LINC01539:19 
LNCipedia gene ID: LINC01539
Location (hg38): chr18:56060576-56068324
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 791 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026719; NONHSAT059397
Alternative gene names: XLOC_012851; linc-TCF4-3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.1995 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:19 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF4-4:1
3.1 lnc-TCF4-4:1
4.0 LINC01539:19
4.1 LINC01539:19
5.0 LINC01539:19
5.1 LINC01539:19
5.2 LINC01539:19