Transcript: LINC01539:2

Basic information

LNCipedia transcript ID: LINC01539:2 
LNCipedia gene ID: LINC01539
Location (hg38): chr18:56083383-56190954
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1143 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026528; NONHSAT059407
Alternative gene names: XLOC_012852; linc-TCF4-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.9079 non-coding 
CPAT coding probability 2.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:2 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF4-5:1
3.1 lnc-TCF4-5:1
4.0 LINC01539:2
4.1 LINC01539:2
5.0 LINC01539:2
5.1 LINC01539:2
5.2 LINC01539:2