Transcript: LINC01539:20

Basic information

LNCipedia transcript ID: LINC01539:20 
LNCipedia gene ID: LINC01539
Ensembl Gene ID: ENSG00000267399
Ensembl Transcript ID: ENST00000589617
Location (hg38): chr18:56061109-56063078
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT059398; ENST00000589617.1
Alternative gene names: ENSG00000267399.1; RP11-456O19.5; ; AC006305.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.2622 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:20 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF4-5:19
4.0 LINC01539:20
4.1 LINC01539:20
5.0 LINC01539:20
5.1 LINC01539:20
5.2 LINC01539:20