Transcript: LINC01539:4

Basic information

LNCipedia transcript ID: LINC01539:4 
LNCipedia gene ID: LINC01539
Location (hg38): chr18:56181344-56188579
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 433 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00026531; NONHSAT059421
Alternative gene names: XLOC_012852; linc-TCF4-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.9079 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:4 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TCF4-5:3
3.1 lnc-TCF4-5:3
4.0 LINC01539:4
4.1 LINC01539:4
5.0 LINC01539:4
5.1 LINC01539:4
5.2 LINC01539:4