Transcript: LINC01539:9

Basic information

LNCipedia transcript ID: LINC01539:9 
LNCipedia gene ID: LINC01539
Location (hg38): chr18:56083271-56137513
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1448 bp
Exons: 6
Sources: NONCODE v4
Alternative transcript names: NONHSAT059403
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.1648 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01539:9 no no no no

Available literature

  1. Tørring (2014), Long non-coding RNA expression profiles in hereditary haemorrhagic telangiectasia., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TCF4-5:9
4.0 LINC01539:9
4.1 LINC01539:9
5.0 LINC01539:9
5.1 LINC01539:9
5.2 LINC01539:9