Transcript: LINC01544:1

Basic information

LNCipedia transcript ID: LINC01544:1 
LNCipedia gene ID: LINC01544
Location (hg38): chr18:61748176-61753684
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2206 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00026194
Alternative gene names: XLOC_012701; linc-KIAA1468-2; TCONS_00026194


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.2925 non-coding 
CPAT coding probability 3.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01544:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDH20-2:1
3.1 lnc-CDH20-2:2
4.0 LINC01544:1
4.1 LINC01544:1
5.0 LINC01544:1
5.1 LINC01544:1
5.2 LINC01544:1