Transcript: LINC01544:3

Basic information

LNCipedia transcript ID: LINC01544:3 
HGNC Gene Symbol: LINC01544    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1544
Ensembl Gene ID: ENSG00000260440
Ensembl Transcript ID: ENST00000567801
Location (hg38): chr18:61748176-61756646
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 5168 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567801.2
Alternative gene names: ENSG00000260440.2; LINC01544; TCONS_00026194


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 8.728 non-coding 
CPAT coding probability 5.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01544:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01544:3
4.1 LINC01544:3
5.0 LINC01544:3
5.1 LINC01544:3
5.2 LINC01544:3