Transcript: LINC01547:5

Basic information

LNCipedia transcript ID: LINC01547:5 
HGNC Gene Symbol: LINC01547    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1547
Ensembl Gene ID: ENSG00000183250
Ensembl Transcript ID: ENST00000615847
Location (hg38): chr21:44932814-44934973
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1595 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000615847.2
Alternative gene names: ENSG00000183250.11; LINC01547;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 20.3265 non-coding 
CPAT coding probability 68.72% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC01547:5 no no no no

Available literature

  1. Reymond (2001), From PREDs and open reading frames to cDNA isolation: revisiting the human chromosome 21 transcription map., Genomics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC01547:5
4.1 LINC01547:5
5.0 LINC01547:5
5.1 LINC01547:5
5.2 LINC01547:5