Transcript: LINC01548:1

Basic information

LNCipedia transcript ID: LINC01548:1 
LNCipedia gene ID: LINC01548
RefSeq ID: NR_024102
Location (hg38): chr21:33165470-33170236
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 595 bp
Exons: 4
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024102; ENST00000451980.2; NR_024102.1
Alternative gene names: ENSG00000229086.3; LINC01548;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -150.3693 non-coding 
CPAT coding probability 14.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01548:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C21orf54-5:1
4.0 LINC01548:1
4.1 LINC01548:1
5.0 LINC01548:1
5.1 LINC01548:1
5.2 LINC01548:1